Plot 1: Expression of all genes across all samples

Plot 2: Expression of all genes across all samples, splitting genes into two groups based on filtering prior to DE

Plot 3: Focusing on the expression across all samples of just the genes which were assessed in differential expression analysis, split into 3 groups

Note that differential expression analysis was performed with just the training data while all samples are plotted here.

Plot 4 (Violin): Focusing on just the upregulated genes, specifically for each gene, distribution of expression for samples which successfully implanted vs those that did not implant

Plot 5 (Beeswarm): Focusing on just the upregulated genes, specifically for each gene, distribution of expression

Plot 6 (Beeswarm, faceted): Focusing on just the upregulated genes, specifically for each gene, distribution of expression

Plot 7 (Beeswarm, faceted, no embryo grade): Focusing on just the upregulated genes, specifically for each gene, distribution of expression

Plot 8 (Boxplot): Focusing on just the upregulated genes, specifically for each gene, distribution of expression

Plot 9 (Boxplot, just training data): Focusing on just the upregulated genes, specifically for each gene, distribution of expression

Plot 10 (Violin): Focusing on just the downregulated genes, specifically for each gene, distribution of expression for samples which successfully implanted vs those that did not implant

Plot 11 (Beeswarm): Focusing on just the downregulated genes, specifically for each gene, distribution of expression

Plot 12 (Beeswarm, faceted): Focusing on just the downregulated genes, specifically for each gene, distribution of expression

Plot 13 (Beeswarm, faceted, no embryo grade): Focusing on just the downregulated genes, specifically for each gene, distribution of expression

Plot 14 (Boxplot): Focusing on just the downregulated genes, specifically for each gene, distribution of expression

Plot 15 (Boxplot, just training data): Focusing on just the downregulated genes, specifically for each gene, distribution of expression